Pumpkin Cheesecake Cupcakes with Salted Caramel Sauce


 Mini Pumpkin Cheesecakes are the perfect fall dessert! They’re perfectly rich and creamy and brimming with spiced pumpkin flavor. And who can resist that decadent caramel sauce? It’s a match meant to be!

Close up image of pumpkin cheesecake mini. Topped with caramel sauce and whipped cream.

Pumpkin Cheesecake in Cupcake Size Servings!

These are one of my favorite fall/Thanksgiving desserts and they are a must on my fall baking list every year.

Only the best make it to the Thanksgiving table right? These definitely make the cut.


Mini Pumpkin Cheesecakes with Salted Caramel Sauce on a white serving plate.

I love that these are in mini individual form so not only are they more fun to serve this way but they also bake faster than a whole cheesecake, plus they take less cooling and chilling time than a whole cheesecake does.

I also love they make enough to feed a crowd since you get 24 from this recipe (but it is easy to split in half if you are serving a smaller group).

Graham cracker crusts in cupcake pan for mini pumkpin cheesecakes.

These will likely be the most talked about dessert at the Thanksgiving table, try them and you’ll see why. They have all those delicious pumpkin pie spices we all crave (but not so much that it overwhelms the flavor of the cheesecake).

They also have the most creamy, luxurious texture (one of the main reasons I’m so obsessed with cheesecake), and you get the perfect light balance of tang to balance out their sweetness.

Mini Pumpkin Cheesecakes with Salted Caramel Sauce | Cooking Classy

And of course let’s not forget the salt! I love Maldon salt. Those little flaked pyramids of salt just make me happy. I just always know good things are to come when I break those out.

And when you finish them off with whipped cream or pecans they become a show-stopping dessert that will impress anyone!

Twelve mini pumpkin cheesecakes.

Add these rich and heavenly, caramel drenched mini cakes of pumpkin perfect to your Thanksgiving menu next week! They are what pumpkin dessert dreams are made of!Mini Pumpkin Cheesecakes with Salted Caramel Sauce | Cooking Classy

More Pumpkin Recipes You’ll Love!

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Mini Pumpkin Cheesecakes with Salted Caramel Sauce

5 from 4 votes

These individual Pumpkin Cheesecakes are the perfect fall dessert! They're perfectly rich and creamy and brimming with spiced pumpkin flavor. And who can resist that decadent caramel sauce? It's a match meant to be!

Course: Dessert
Cuisine: American
Keyword: Pumpkin Cheesecake
Prep Time: 25 minutes
Cook Time: 20 minutes
Total Time: 6 hours 15 minutes
Servings: 24
Calories: 242 kcal
Author: Jaclyn



  • 1 3/4 cup (220g) finely crushed graham crackers (about 14 full sheets)
  • 2 Tbsp (28g) granulated sugar
  • 6 Tbsp (86g) salted butter, melted


  • 1 cup (215g) packed light-brown sugar
  • 6 Tbsp (75g) granulated sugar
  • 3 Tbsp (30g) all-purpose flour
  • 1 1/2 tsp ground cinnamon
  • 1/2 tsp ground nutmeg
  • 1/2 tsp ground ginger
  • 1/8 tsp ground cloves
  • 3 (8 oz) pkgs. cream cheese, well softened
  • 4 large eggs
  • 1 1/2 cups (362g) canned pumpkin puree
  • 1 tsp vanilla extract
  • 1/4 cup (60ml) heavy cream
  • 1 Homemade caramel sauce, see notes*
  • Flaked sea salt, such as Maldon**
  • Chopped pecans or lightly sweetened whipped cream (optional)


  1. For the crust: Preheat oven to 325 degrees. In a mixing bowl, whisk together crushed graham crackers with 2 Tbsp granulated sugar. 
  2. Pour in melted butter and stir mixture until evenly coated. Divide graham cracker mixture among 24 paper lined muffin cups, adding about a heaping Tbsp to each. 
  3. Firmly press mixture into an even layer. Bake in preheated oven 5 minutes. Remove from oven and allow to cool while preparing filling.
  4. For the filling: In a medium mixing bowl, whisk together brown sugar, granulated sugar, flour, cinnamon, nutmeg, ginger and cloves until no clumps of sugar remain (break up any little clumps with your fingertips).
  5. Add cream cheese to a large mixing bowl, pour sugar mixture over cream cheese and using an electric hand mixer set on low speed, blend together until smooth, about 30 seconds. 

  6. Mix in eggs one at a time. Blend in pumpkin and vanilla, then mix in heavy cream. 
  7. Tap bowl forcefully against countertop to release some of the excess air bubbles, about 30 times. Divide mixture over graham cracker crust in muffin liners, adding about 1/4 cup to each cup and filling nearly full. 
  8. Bake in preheated oven until nearly set (no longer very jiggly), about 20 - 25 minutes. 
  9. Remove from oven and allow to cool on a wire rack at room temperature, 30 minutes, then transfer to refrigerator and chill 3 hours until set. 

  10. Top with caramel sauce and a pinch of sea salt just before serving. Add pecans or whipped cream if desired. Store (caramel and cheesecakes separate) in refrigerator in an airtight container.

Recipe Notes

  • *Salted Caramel Sauce Recipe here.
  • **Alternately you can mix in 3/4 - 1 tsp fine sea salt with the sugar/water mixture when making the caramel rather then topping them with sea salt.
  • Caramel sauce and toppings not included in nutrition.
Nutrition Facts
Mini Pumpkin Cheesecakes with Salted Caramel Sauce
Amount Per Serving
Calories 242 Calories from Fat 135
% Daily Value*
Total Fat 15g 23%
Saturated Fat 8g 40%
Cholesterol 69mg 23%
Sodium 191mg 8%
Potassium 110mg 3%
Total Carbohydrates 23g 8%
Sugars 16g
Protein 3g 6%
Vitamin A 57.9%
Vitamin C 0.8%
Calcium 5.5%
Iron 5.3%
* Percent Daily Values are based on a 2000 calorie diet.


  • Linda: These were truly THE best pumpkin cheese cakes I have ever tasted, let alone MADE! The caramel on the top were a delicious highlight. Thank you for this yummy recipe. November 23, 2018 at 11:30am Reply

  • Skylar: Hi! I know this is an older post, but I’m hoping you will still be able to answer my question. Do you think using fresh pumpkin puree would affect the texture here? I use it in place of canned in my cake recipe and the added moisture actually helps, but I want to make sure it won’t negatively affect this recipe. I prefer using fresh puree that I make from pumpkins I get from the farm nearby because it feels more festive, lol. Plus, fresher is better, right? September 25, 2018 at 11:24am Reply

    • Jaclyn: Like you say the extra moisture might effect the outcome. What you could try is pressing some of the excess moisture by wrapping in paper towels then measure from there. October 15, 2018 at 5:46pm Reply

  • Autumn Billick: These look amazing. Wanting to make these for Thanksgiving but have gluten issues. Donyou think I could substitute GF flour or even cornstarch in place of the plain flour? November 21, 2017 at 10:38am Reply

    • Jaclyn: Yes the cornstarch would be fine in place of flour, use 1-tbsp and then gluten free graham crackers. Hope you love it! Happy Holidays! November 21, 2017 at 11:19am Reply

  • Morgan: I made these and they were a hit! Looking to try and make one large cheesecake for Thanksgiving with this recipe. Any suggestions for measurements and cook time? Thank you!! November 19, 2017 at 2:54pm Reply

    • Jaclyn: I’m glad they were enjoyed! For a full cheesecake I’d go with these same measurements then I’m guessing it would take about 1 hr – 1 hr 15 minutes at 325 cooked in a water bath. November 19, 2017 at 10:20pm Reply

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